Centre for Environmental and Marine Studies

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Publications

Environmental and adaptive changes necessitate a paradigm shift for indicators of fecal contamination

Publication . Teixeira, Pedro; Salvador, Daniel; Brandão, João; Ahmed, Warish; Sadowsky, Michael

Changes in the occurrence, distribution, and seasonal variation of waterborne pathogens due to global climate change may increase the risk of human exposure to these microorganisms, thus heightening the need for more reliable surveillance systems. Routine monitoring of drinking water supplies and recreational waters is performed using fecal indicator microorganisms, such as Escherichia coli, Enterococcus spp., and coliphages. However, the presence and numbers of these indicators, especially E. coli and Enterococcus spp., do not correlate well with those of other pathogens, especially enteric viruses, which are a major cause of waterborne outbreaks associated with contaminated water and food, and recreational use of lakes, ponds, rivers, and estuarine waters. For that reason, there is a growing need for a surveillance system that can detect and quantify viral pathogens directly in water sources to reduce transmission of pathogens associated with fecal transmission. In this review, we present an updated overview of relevant waterborne enteric viruses that we believe should be more commonly screened to better evaluate water quality and to determine the safety of water use and reuse and of epidemiological data on viral outbreaks. We also discuss current methodologies that are available to detect and quantify these viruses in water resources. Finally, we highlight challenges associated with virus monitoring. The information presented in this review is intended to aid in the assessment of human health risks due to contact with water sources, especially since current environmental and adaptive changes may be creating the need for a paradigm shift for indicators of fecal contamination.

2020Journal article

Restricted access

The Influence of the Interaction between Climate and Competition on the Distributional Limits of European Shrews

Publication . Neves, Tomé; Borda-de-Água, Luís; Mathias, Maria da Luz; Tapisso, Joaquim T.

It is known that species’ distributions are influenced by several ecological factors. Nonetheless, the geographical scale upon which the influence of these factors is perceived is largely undefined. We assessed the importance of competition in regulating the distributional limits of species at large geographical scales. We focus on species with similar diets, the European Soricidae shrews, and how interspecific competition changes along climatic gradients. We used presence data for the seven most widespread terrestrial species of Soricidae in Europe, gathered from GBIF, European museums, and climate data from WorldClim. We made use of two Joint Species Distribution Models to analyse the correlations between species’ presences, aiming to understand the distinct roles of climate and competition in shaping species’ distributions. Our results support three key conclusions: (i) climate alone does not explain all species’ distributions at large scales; (ii) negative interactions, such as competition, seem to play a strong role in defining species’ range limits, even at large scales; and (iii) the impact of competition on a species’ distribution varies along a climatic gradient, becoming stronger at the climatic extremes. Our conclusions support previous research, highlighting the importance of considering biotic interactions when studying species’ distributions, regardless of geographical scale

2022Journal article

Open access

Egyptian Mongoose (Herpestes ichneumon) Gut Microbiota: Taxonomical and Functional Differences across Sex and Age Classes

Publication . Pereira, André C.; Bandeira, Victor; Fonseca, Carlos; Cunha, Mónica V.

The Egyptian mongoose (Herpestes ichneumon) is a medium-size carnivore that, in Europe, is restricted to Iberia. The bio-ecology of this species remains to be elucidated in several dimensions, including gut microbiota that is nowadays recognized as a fundamental component of mammals. In this work, we investigated the gut microbiota of this herpestid by single-molecule real-time sequencing of twenty paired male (n = 10) and female (n = 10) intestinal samples. This culture-independent approach enabled microbial profiling based on 16S rDNA and investigation of taxonomical and functional features. The core gut microbiome of the adult subpopulation was dominated by Firmicutes, Fusobacteria, Actinobacteria, and Proteobacteria. Eight genera were uniquely found in adults and five in non-adults. When comparing gut bacterial communities across sex, four genera were exclusive of females and six uniquely found in males. Despite these compositional distinctions, alpha- and beta-diversity analyses showed no statistically significant differences across sex or between adult and non-adult specimens. However, when function was inferred, males presented a significantly higher abundance of amino acid and citrate cycle metabolic pathways, compared to the significant overrepresentation in females of galactose metabolic pathways. Additionally, adults exhibited a significantly higher abundance of cationic antimicrobial peptide resistance pathways, while non-adults bared a significant overrepresentation of two-component systems associated with antibiotic synthesis, flagellin and biofilm production, and chemotaxis control. This study adds new insights into the mongoose bio-ecology palette, highlighting taxonomical and functional microbiome dissimilarities across sex and age classes, possibly related to primary production resources and life-history traits that impact on behavior and diet.

2020-03Journal article

Open access

One rule does not fit it all: patterns and drivers of stakeholders perspectives of the endangered Iberian wolf

Publication . Torres, RT; Lopes, Diana; Fonseca, C.; Rosalino, L. M.

Public attitudes are vital for the successful implementation of management strategies and conservation programs. However, contradictory interests among different stakeholders can create important setbacks, creating barriers to achieve conservation goals. The endangered Iberian wolf (Canis lupus signatus) occupies now only 20 % of its historical distribution area, in Portugal, and its reduction was mostly due to direct human persecution. Here, we assessed locals’ attitudes towards the Iberian wolf in northeast Portugal, in a region where humans and wolves coexist for centuries. A total of 323 questionnaires from three different interest groups (general public, livestock owners and hunters) were analysed. We tested the differences in attitude and fear level patterns between the different groups and assessed what socio-demographic factors could be influencing the detected patterns. We found that general attitude towards this carnivore was neutral to positive, probably owing to the low levels of livestock predation and long coexistence with local populations. However, most drivers differed among stakeholders groups. Education, knowledge, and level of fear were strong predictors explaining attitudes towards this endangered species. We stress the importance of assessing attitudes patterns and identifying the socio-psychological factors as necessary tools to facilitate the development of targeted tolerance-promoting strategies. Among other instruments, increasing locals’ tolerance toward the Iberian wolf can be achieved by target education interventions, where the stakeholders can actively take part in discussions to accommodate their needs and expectation, rather than be listeners of the implemented programs.

2020-04-29Journal article

Open access

Drivers of wood mouse body condition in Mediterranean agroforestry landscapes

Publication . Fragoso, Ricardo; Santos-Reis, M.; Rosalino, L. M.

Agriculture and pastureland for cattle grazing are common land uses in Mediterranean landscapes. These activities significantly alter the habitat conditions, affecting the body conditions of wild communities, especially those with low vagility, such as small mammals. We aimed to evaluate how cattle grazing and the habitat composition affected the body condition of the wood mouse Apodemus sylvaticus in a southern Mediterranean agroforestry system using the Scale Mass Index (SMI) as an indicator of individuals condition. To assess variation in body condition, wood mice were live-trapped in a gradient of grazed sites with different stocking intensities, as well in sites excluded to grazing at different time periods (1998, 2004, and 2008). Wood mice body conditions were influenced by both microhabitat and macrohabitat drivers, with sex-biased patterns, while for the females, only the shrub species had an influence (a microhabitat variable); for the males, both the shrub species and the undercover density (and specifically their interaction) were the important drivers (microhabitat and macrohabitat variables). Unexpectedly, the physical condition variation detected between periods was not directly proportional to the exclusion period, but rather, a certain degree of similarity was found between the different sites (sites excluded since 2004 paired with grazed sites). These results suggest that the presence of food and shelter are determinants to the wood mouse’s physical condition: for females, securing food sources enhance the body condition, while for males, the degree of cover, and consequently refuge against predators, seems to be determinant. These results reinforce the need for sustainable landscape management to assure the maintenance of habitat heterogeneity.

2020-01-06Journal article

Open access