Browsing by Author "Carvalho, Ana"
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- Chromosome and DNA methylation dynamics during meiosis in autotetraploid Arabidopsis arenosaPublication . Carvalho, Ana; Delgado, Margarida; Barão, Augusta; Frescatada, Márcia; Ribeiro, Edna; Pikaard, Craig S.; Viegas, Wanda; Neves, NunoVariation in chromosome number due to polyploidy can seriously compromise meiotic stability. In autopolyploids, the presence of more than two homologous chromosomes may result in complex pairing patterns and subsequent anomalous chromosome segregation. In this context, chromocenter, centromeric, telomeric and ribosomal DNA locus topology and DNA methylation patterns were investigated in the natural autotetraploid, Arabidopsis arenosa. The data show that homologous chromosome recognition and association initiates at telomeric domains in premeiotic interphase, followed by quadrivalent pairing of ribosomal 45S RNA gene loci (known as NORs) at leptotene. On the other hand, centromeric regions at early leptotene show pairwise associations rather than associations in fours. These pairwise associations are maintained throughout prophase I, and therefore likely to be related to the diploid-like behavior of A. arenosa chromosomes at metaphase I, where only bivalents are observed. In anthers, both cells at somatic interphase as well as at premeiotic interphase show 5-methylcytosine (5-mC) dispersed throughout the nucleus, contrasting with a preferential co-localization with chromocenters observed in vegetative nuclei. These results show for the first time that nuclear distribution patterns of 5-mC are simultaneously reshuffled in meiocytes and anther somatic cells. During prophase I, 5-mC is detected in extended chromatin fibers and chromocenters but interestingly is excluded from the NORs what correlates with the pairing pattern
- Da Democratização das Formas de Governação na Política à Partilha de Autoridade no Campo dos Museus e do TerritórioPublication . Carvalho, Ana; Falanga, Roberto
- Enhancement of sewage sludge bioconversion to methane by addition of exhausted coffea biowaste liquid fractionPublication . Fragoso, Rita; Carvalho, Ana; Duarte, ElizabethAnaerobic co-digestion of organic rich wastes and wastewater sludge has become an attractive economic possibility for water utilities as it enhances biogas production. The suitability of the organic rich waste depends on its biodegradability as well as on its synergetic effect on the anaerobic digestion process. The feasibility of sewage sludge (SS) treatment via co-digestion was studied in a semi-continuous mode at mesophilic conditions (36 ± 1 °C), with a hydraulic retention time of 17 days and an average organic loading rate of 0.94 ± 0.05 gVS Lreactor day− 1, using the liquid fraction of pre-treated exhausted coffee biowaste (LECB) as a co-substrate. An anaerobic co-digestion trial (T1) was performed using as feeding mixture 80% SS and 20% LECB (v:v) and compared against a reference scenario of mono-digestion of SS (T0). The stability along assays was ensured by monitoring the digestate characteristics (pH, electrical conductivity, total alkalinity and ammonia content) and the specific energy-loading rate (SELR). Along the operation time of T1, methane yield and VS removal were significantly higher in comparison to mono-digestion of SS. Results showed that the addition of the co-substrate had a positive effect on specific methane production (3 times higher) and methane content (12% higher), indicating this is a feasible strategy towards self-sufficient wastewater treatment plants
- Forward genetics in Wolbachia: regulation of Wolbachia proliferation by the amplification and deletion of an addictive genomic islandPublication . Duarte, Elves H.; Carvalho, Ana; López-Madrigal, Sergio; Costa, João; Teixeira, LuisWolbachia is one of the most prevalent bacterial endosymbionts, infecting approximately 40% of terrestrial arthropod species. Wolbachia is often a reproductive parasite but can also provide fitness benefits to its host, as, for example, protection against viral pathogens. This protective effect is currently being applied to fight arboviruses transmission by releasing Wolbachia-transinfected mosquitoes. Titre regulation is a crucial aspect of Wolbachia biology. Higher titres can lead to stronger phenotypes and fidelity of transmission but can have a higher cost to the host. Since Wolbachia is maternally transmitted, its fitness depends on host fitness, and, therefore, its cost to the host may be under selection. Understanding how Wolbachia titres are regulated and other aspects of Wolbachia biology has been hampered by the lack of genetic tools. Here we developed a forward genetic screen to identify new Wolbachia over-proliferative mutant variants. We characterized in detail two new mutants, wMelPop2 and wMelOctoless, and show that the amplification or loss of the Octomom genomic region lead to over-proliferation. These results confirm previous data and expand on the complex role of this genomic region in the control of Wolbachia proliferation. Both new mutants shorten the host lifespan and increase antiviral protection. Moreover, we show that Wolbachia proliferation rate in Drosophila melanogaster depends on the interaction between Octomom copy number, the host developmental stage, and temperature. Our analysis also suggests that the life shortening and antiviral protection phenotypes of Wolbachia are dependent on different, but related, properties of the endosymbiont; the rate of proliferation and the titres near the time of infection, respectively. We also demonstrate the feasibility of a novel and unbiased experimental approach to study Wolbachia biology, which could be further adapted to characterize other genetically intractable bacterial endosymbionts.
- Molecular characterisation of post-fire naturally regenerated populations of maritime Pine (Pinus pinaster Ait.) in the North of PortugalPublication . Carvalho, Ana; Ribeiro, Stéphanie; Gaspar, Maria João; Fonseca, Teresa; Lima-Brito, JoséWildfires act as a selection force threatening the sustainability and diversity of forest genetic resources. Few studies have investigated the genetic effects of forest wildfires. Species with perennial canopy seed banks in serotinous cones and soil or with long-distance seed and pollen dispersion can preserve genetic diversity and population differentiation under normal fire regimes. To test this hypothesis, we characterised molecularly Pinus pinaster Aiton (maritime pine) seedlings produced from seeds sampled in post-fire, naturally regenerated populations that had been subject to different fire regimes in the North of Portugal using inter-simple sequence repeats (ISSRs). The sampled populations burned once (A), twice (B), or three (D) times or had no prior fire history (C, control). Given the globally low seed germination ability, only 104 plantlets regenerated and were described. These plantlets were grouped according to their origin population. Intra-group ISSR polymorphism ranged from 72.73% (B) to 89.41% (D), revealing genetic differentiation among groups originating from populations that had experienced different fire recurrence. Overall, the unaffected genetic diversity of the regenerated plantlets allowed us to accept the hypothesis. Our findings enhance our understanding of the species ability to withstand fire-induced challenges and their responses to wildfires, guiding conservation endeavours and forest management strategies to bolster ecosystem resilience.
- Physical, chemical and mechanical properties of Pinus sylvestris wood at five sites in PortugalPublication . Fernandes, Cláudia; Gaspar, Maria João; Pires, Jani; Alves, Ana; Simões, Rita; Rodrigues, José Carlos; Silva, Maria Emília; Carvalho, Ana; Brito, José Eduardo; Lousada, José LuísThe reduction of resinous species in Portuguese forest areas has caused constraints to wood industry supplies. Portugal represents the extreme southwest of Scots pine (Pinus sylvestris) natural distribution and large gaps exist in the knowledge of its wood-quality characteristics. Understanding the relationship between these traits is important for recognizing which combination of wood properties is the most suitable for specific uses. To address these questions, we assessed wood-quality traits, namely, wood-density components (microdensitometric analysis), chemical composition (NIR spectrometry) and mechanical properties (bending tests) of wood samples collected at five representative forest sites in Portugal. Our results showed that Portuguese Pinus sylvestris has good radial growth and denser wood, higher extractive content and higher stiffness and strength than northern European provenances. The lignin content was within the range attributed to softwoods. Among the Portuguese stands, trees growing at lower-altitude sites exhibited denser wood and higher mechanical properties, while trees from high-elevations showed higher amounts of lignin. Ring density was more strongly correlated with earlywood than latewood density. A negative, non-significant correlation was found between ring density and width, supporting the assumption that the higher radial growth (ring width) does not negatively affect wood quality (density). In general, chemical properties had a weak relationship with physical and mechanical properties (MOE and MOR). Both mechanical traits were positively correlated with density and growth components, supporting the assumption that trees with high radial growth do not exhibit poorer mechanical performances
- Temporal mismatches in flight activity patterns between Pipistrellus kuhlii and Prays oleae in olive farms: Implications for biocontrol services potentialPublication . Herrera, José M.; Carvalho, Ana; Barreiro, Sílvia; Jiménez-Navarro, Gerardo; Melguizo-Ruiz, Nereida; Beja, Pedro; Moreira, Francisco; Vasconcelos, Sasha; Morgado, Ruiract 1. Biocontrol services are widely recognized to provide key incentives for bat con- servation. However, we have virtually no information on whether and how dis- ruptions in bat-mediated biocontrol services are driven by mismatches between the temporal activity patterns of insectivorous bats and insect pests. 2. We investigated the temporal relationship between the nightly activity patterns of the common pipistrelle bat (Pipistrellus kuhlii) and the olive fruit moth (Prays oleae). Temporal mismatches between species pairs were estimated as the time difference (expressed as a percentage of the night) at which P. kuhlii and P. oleae reached 50% of their abundance. 3. The study was carried out during spring, summer, and fall between 2017 and 2019 in 60 olive farms representing increasing levels of structural simplification (as a surrogate of agricultural intensification). Olive farms were classified as ex- hibiting high (i.e. HIGH olive farms; n = 27), intermediate (MID; n = 18), and low (LOW; n = 15) structural complexity. 4. Temporal mismatches between the activity levels of P. kuhlii and P. oleae varied between seasons and types of olive farms, being comparatively lower in summer than in spring and fall. Furthermore, summer was the only season in which tem- poral mismatches between species pairs differed between types of olive farms, with higher temporal mismatches found in LOW than in HIGH and MID olive farms. 5. Overall, our work demonstrates the existence of temporal mismatches between the nightly activity patterns of P. kuhlii and P. oleae. Furthermore, it demonstrates that the structural simplification of olive farms increases temporal mismatches between species pairs, particularly in summer when bat-mediated biocontrol ser- vices are most needed. 6. Synthesis and applications. Future research should consider mismatches between the temporal activity patterns of insectivorous bats and insect pests. Otherwise, the actual impact of agricultural intensification on bat-mediated biocontrol ser- vices as well as the economic impact of their loss on the agriculture industry might be underestimated. To enhance biocontrol services, we propose increasing the availability of suitable roosting and foraging sites as well as conserving areas of remnant native woodland and scattered hollow-bearing trees.