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The potential and shortcomings of mitochondrial DNA analysis for cheetah conservation management

dc.contributor.authorMeißner, René
dc.contributor.authorWinter, Sven
dc.contributor.authorWesterhüs, Uta
dc.contributor.authorSliwa, Alexander
dc.contributor.authorGreve, Carola
dc.contributor.authorBottriell, Lena Godsall
dc.contributor.authorBottriell, Paul
dc.contributor.authorFernandes, C
dc.contributor.authorVercammen, Paul
dc.contributor.authorHunter, Luke T. B.
dc.contributor.authorAbramov, Alexei V.
dc.contributor.authorKhalatbari, Leili
dc.contributor.authorHorin, Petr
dc.contributor.authorBurger, Pamela A.
dc.contributor.authorProst, Stefan
dc.date.accessioned2022-12-20T14:57:04Z
dc.date.available2022-12-20T14:57:04Z
dc.date.issued2022-12
dc.description.abstractThere are only about 7,100 adolescent and adult cheetahs (Acinonyx jubatus) remaining in the wild. With the majority occurring outside protected areas, their numbers are rapidly declining. Evidence-based conservation measures are essential for the survival of this species. Genetic data is routinely used to inform conservation strategies, e.g., by establishing conservation units (CU). A commonly used marker in conservation genetics is mitochondrial DNA (mtDNA). Here, we investigated the cheetah’s phylogeography using a large-scale mtDNA data set to refine subspecies distributions and better assign individuals to CUs. Our dataset mostly consisted of historic samples to cover the cheetah’s whole range as the species has been extinct in most of its former distribution. While our genetic data largely agree with geography-based subspecies assignments, several geographic regions show conflicting mtDNA signals. Our analyses support previous findings that evolutionary forces such as incomplete lineage sorting or mitochondrial capture likely confound the mitochondrial phylogeography of this species, especially in East and, to some extent, in Northeast Africa. We caution that subspecies assignments solely based on mtDNA should be treated carefully and argue for an additional standardized nuclear single nucleotide polymorphism (SNP) marker set for subspecies identification and monitoring. However, the detection of the A. j. soemmeringii specific haplogroup by a newly designed Amplification-Refractory Mutation System (ARMS) can already provide support for conservation measures.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationMeißner, R., Winter, S., Westerhüs, U. et al. The potential and shortcomings of mitochondrial DNA analysis for cheetah conservation management. Conserv Genet (2022). https://doi.org/10.1007/s10592-022-01483-1pt_PT
dc.identifier.doi10.1007/s10592-022-01483-1pt_PT
dc.identifier.urihttp://hdl.handle.net/10451/55462
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherSpringerpt_PT
dc.relationCentral European Science Partnership (CEUS) project Austrian Science Fund (FWF) I5081-B/ GACR Czech Republic 21-28637 Lpt_PT
dc.relationTechnology Cooperation Austria, South Africa grant ZA02/2019 from the Austrian Agency for Education and Internationalisation (OeAD) and the National Research Foundation, South Africapt_PT
dc.relationFCT UID/BIA/00329/2020pt_PT
dc.relationAustrian Science Fund (FWF)pt_PT
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.titleThe potential and shortcomings of mitochondrial DNA analysis for cheetah conservation managementpt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.citation.titleConservation Geneticspt_PT
person.familyNameFernandes
person.givenNameCarlos
person.identifier.ciencia-idF413-49F5-CA96
person.identifier.orcid0000-0002-1386-8103
person.identifier.ridJ-3045-2013
person.identifier.scopus-author-id8966321900
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublication85288c51-371a-4260-9f02-4834fd136534
relation.isAuthorOfPublication.latestForDiscovery85288c51-371a-4260-9f02-4834fd136534

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