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Haplotype diversity patterns in Quercus suber (Fagaceae) inferred from cpDNA sequence data

2023Artigo científico Acesso aberto
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dc.contributor.authorSousa, Filipe
dc.contributor.authorViegas, Mariana Bray
dc.contributor.authorCosta, Joana
dc.contributor.authorMarques, Isabel
dc.contributor.authorPina-Martins
dc.contributor.authorSimões, Fernanda
dc.contributor.authorMatos, José
dc.contributor.authorGlushkova, Maria
dc.contributor.authorMiguel, Célia
dc.contributor.authorVeloso, Maria Manuela
dc.contributor.authorOliveira, M. Margarida
dc.contributor.authorRicardo, Cândido Pinto
dc.contributor.authorBatista, Dora
dc.contributor.authorPaulo, Octávio S.
dc.date.accessioned2024-01-10T19:05:15Z
dc.date.available2024-01-10T19:05:15Z
dc.date.issued2023
dc.description.abstractChloroplast genome diversity in cork oak (Quercus suber) is characterised by the occurrence of haplotypes that are akin to those found in other Mediterranean oak species, particularly in Q. ilex and Q. rotundifolia, suggesting the possible presence of an introgressed chloroplast lineage. To further investigate this pattern, we reconstructed chloroplast haplotypes by sequencing four chloroplast markers (cpDNA), sampled across 181 individuals and 10 taxa. Our analyses resulted in the identification of two diversified chloroplast haplogroups in Q. suber, corresponding to a geographically widespread lineage and an Afro-Iberian lineage. Time-calibrated phylogenetic analyses of cpDNA point to a Miocene origin of the two haplogroups in Q. suber, suggesting that the Afro-Iberian lineage was present in cork oak before the onset of glaciation periods. The persistence of the two haplogroups in the western part of the species distribution range may be a consequence of either ancient introgression events or chloroplast lineage sorting, combined with different fixation in refugia through glaciation periods. Our results provide a comprehensive insight on the origins of chloroplast diversity in these ecologically and economically important Mediterranean oaks.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.doi10.1007/s00606-023-01879-7pt_PT
dc.identifier.urihttp://hdl.handle.net/10451/61722
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherSpringerpt_PT
dc.relationKeep Pace: Selection of trees keeping pace with fast environmental changes, a science-based approach for sustainable XXI century Oak forests’, co-funded by the EU ERDF funds, within the Portugal 2020 Partnership Agreement and Programa Operacional Regional Algarvept_PT
dc.relationFCT ALG-01-0145-FEDER-029263 / PTDC/ASP/ SIL/29263/2017pt_PT
dc.relationFCT PTDC/AGR-GPL/104966/2008pt_PT
dc.relationFCT SOBREIRO/0036/2009pt_PT
dc.relationFCT GREEN-ITpt_PT
dc.relationFCT UIDB/04551/2020pt_PT
dc.relationFCT UIDB/00329/2020pt_PT
dc.relationOpen access funding provided by FCT|FCCN (b-on)pt_PT
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.subjectGlacial refugiapt_PT
dc.subjectIntrogressionpt_PT
dc.subjectLineage sortingpt_PT
dc.subjectMediterraneanpt_PT
dc.subjectOak forestspt_PT
dc.subjectPhylogeographypt_PT
dc.titleHaplotype diversity patterns in Quercus suber (Fagaceae) inferred from cpDNA sequence datapt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.citation.issue6pt_PT
oaire.citation.titlePlant Systematics and Evolutionpt_PT
oaire.citation.volume309pt_PT
person.familyNameSousa
person.familyNamePina Martins
person.familyNamePaulo
person.givenNameFilipe
person.givenNameFrancisco
person.givenNameOctávio
person.identifier119335
person.identifier.ciencia-idC911-3ED1-309C
person.identifier.ciencia-id1E1C-2D9B-5338
person.identifier.ciencia-id471A-1219-9C5F
person.identifier.orcid0000-0002-8278-9062
person.identifier.orcid0000-0003-1836-397X
person.identifier.orcid0000-0001-5408-5212
person.identifier.ridJ-1645-2015
person.identifier.ridD-9921-2011
person.identifier.scopus-author-id55368207500
person.identifier.scopus-author-id25630967600
person.identifier.scopus-author-id6602677193
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublicationba258acd-6cb9-4d9e-b65d-5a4c54df311f
relation.isAuthorOfPublication78fd172f-1d2d-471d-a35b-8abb75e9fb7e
relation.isAuthorOfPublication2be59178-7c2d-4df6-9d6f-3aaef29c0a53
relation.isAuthorOfPublication.latestForDiscovery78fd172f-1d2d-471d-a35b-8abb75e9fb7e

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