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Citrobacter portucalensis sp. nov., isolated from an aquatic sample

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dc.contributor.authorRibeiro, Teresa Gonçalves
dc.contributor.authorGonçalves, Bruno
dc.contributor.authorSilva, Mickael
dc.contributor.authorNovais, Ângela
dc.contributor.authorMachado, Elisabete
dc.contributor.authorCarrico, Joao Andre
dc.contributor.authorPeixe, Luísa
dc.date.accessioned2022-09-08T14:05:46Z
dc.date.available2022-09-08T14:05:46Z
dc.date.issued2017
dc.description© 2017 IUMSpt_PT
dc.description.abstractA Gram-stain-negative strain, A60T, isolated from a water well sample in Portugal, was characterized phenotypically, genotypically and phylogenetically. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain A60T belonged to the genus Citrobacter, and recN gene phylogeny revealed one strongly supported clade encompassing strain A60T and 13 other strains from public databases, distinct from currently recognized species of the genus Citrobacter. Furthermore, multilocus sequence analysis (MLSA) based on concatenated partial fusA, leuS, pyrG and rpoB sequences confirmed the classification obtained with the recN sequence. In silico genomic comparisons, including average nucleotide identity (ANI) and the genome-to-genome distance calculator (GGDC), showed 94.6 % and 58.4 % identity to the closest relative Citrobacter freundii ATCC 8090T, respectively. The ability to metabolize different compounds further discriminated strain A60T from other species of the genus Citrobacter. The G+C content of strain A60T is 52.0 %. The results obtained support the description of a novel species within the genus Citrobacter, for which the name Citrobacter portucalensis sp. nov. is proposed, with the type strain A60T (=DSM 104542T=CECT 9236T).pt_PT
dc.description.sponsorshipThis work received financial support from the European Union (FEDER funds POCI/01/0145/FEDER/007728, LISBOA-01-0145-FEDER-016417) and from National Funds [Fundação para a Ciência e a Tecnologia (FCT) and Ministério da Educação e Ciência] under the Partnership Agreement PT2020 UID/Multi/04378/2013 and from project BacGenTrack TUBITAK/0004/2014 [FCT/ Scientific and Technological Research Council of Turkey (Türkiye Bilimsel ve Teknolojik Araşrrma Kurumu, TÜ̈BİTAK)]. T. G. R., B. R. G. and Â. N. were supported by fellowships from FCT through Programa Operacional Capital Humano (POCH) (grant numbers SFRH/BD/75752/2011, SFRH/BD/101448/2014 and SFRH/BPD/104927/2014, respectively).pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationInt J Syst Evol Microbiol. 2017 Sep;67(9):3513-3517pt_PT
dc.identifier.doi10.1099/ijsem.0.002154pt_PT
dc.identifier.eissn1466-5034
dc.identifier.issn1466-5026
dc.identifier.urihttp://hdl.handle.net/10451/54384
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherMicrobiology Societypt_PT
dc.relationPOCI/01/0145/FEDER/007728pt_PT
dc.relationLISBOA-01-0145-FEDER-016417pt_PT
dc.relationApplied Molecular Biosciences Unit
dc.relationECOLOGY AND EVOLUTION OF ENTEROBACTERIACEAE CLONES AND MOBILE GENETIC ELEMENTS ASSOCIATED WITH ACQUIRED AMPC BETA-LACTAMASES QAMPC FROM DIFFERENT ORIGINS
dc.relationNew tools for visualization and analysis of draft genomes for microbial molecular epidemiology
dc.relationIdentification of biomarkers for detection of clinically relevant Escherichia coli clones using a high-throughput multi-omics approach
dc.relation.publisherversionhttps://www.microbiologyresearch.org/content/journal/ijsempt_PT
dc.subjectANIpt_PT
dc.subjectAverage nucleotide identitypt_PT
dc.subjectGGDCpt_PT
dc.subjectGenome-to-genome distance calculatorpt_PT
dc.subjectMLSApt_PT
dc.subjectMultilocus sequence analysispt_PT
dc.titleCitrobacter portucalensis sp. nov., isolated from an aquatic samplept_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardNumberUID/Multi/04378/2013
oaire.awardNumberSFRH/BD/75752/2011
oaire.awardNumberSFRH/BD/101448/2014
oaire.awardNumberSFRH/BPD/104927/2014
oaire.awardTitleApplied Molecular Biosciences Unit
oaire.awardTitleECOLOGY AND EVOLUTION OF ENTEROBACTERIACEAE CLONES AND MOBILE GENETIC ELEMENTS ASSOCIATED WITH ACQUIRED AMPC BETA-LACTAMASES QAMPC FROM DIFFERENT ORIGINS
oaire.awardTitleNew tools for visualization and analysis of draft genomes for microbial molecular epidemiology
oaire.awardTitleIdentification of biomarkers for detection of clinically relevant Escherichia coli clones using a high-throughput multi-omics approach
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UID%2FMulti%2F04378%2F2013/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/FARH/SFRH%2FBD%2F75752%2F2011/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT//SFRH%2FBD%2F101448%2F2014/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/FARH/SFRH%2FBPD%2F104927%2F2014/PT
oaire.citation.endPage3517pt_PT
oaire.citation.issue9pt_PT
oaire.citation.startPage3513pt_PT
oaire.citation.titleInternational Journal of Systematic and Evolutionary Microbiologypt_PT
oaire.citation.volume67pt_PT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStreamFARH
oaire.fundingStreamFARH
person.familyNameGonçalves
person.familyNameSilva
person.familyNameCarrico
person.givenNameBruno
person.givenNameMickael
person.givenNameJoao
person.identifier391563
person.identifier.orcid0000-0002-5775-6955
person.identifier.orcid0000-0002-9348-0482
person.identifier.orcid0000-0002-5274-2722
person.identifier.ridE-2656-2017
person.identifier.ridA-7367-2008
person.identifier.scopus-author-id8266333200
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsrestrictedAccesspt_PT
rcaap.typearticlept_PT
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