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Kinship Analysis and Pedigree Reconstruction of a Natural Regenerated Cork Oak (Quercus suber) Population

2022Artigo científico Acesso aberto
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dc.contributor.authorMendes, Bruna
dc.contributor.authorSampaio, Teresa
dc.contributor.authorAntunes, Marta A.
dc.contributor.authorMagalhães, Hugo
dc.contributor.authorSilva, Filipe Costa
dc.contributor.authorBorges, Carla
dc.contributor.authorSimões, Fernanda
dc.contributor.authorUsié, Ana
dc.contributor.authorAlmeida, Maria Helena
dc.contributor.authorRamos, António Marcos
dc.date.accessioned2022-03-03T09:56:07Z
dc.date.available2022-03-03T09:56:07Z
dc.date.issued2022
dc.description.abstractCork oak (Quercus suber L.) is a valuable forest species in the western Mediterranean Basin due to its ecological value and the production of cork (a renewable natural material). Cork quality depends on the genetic background and cork oak environment, which has long been recognized. As no cork oak genetic trials with pedigree information were available, the inference of the genetic relatedness between individuals from molecular markers can potentially be applied to natural populations. This work aimed to investigate the potential of performing kinship prediction and pedigree reconstruction by SNP genotyping a natural cork oak population. A total of 494 trees located in Portugal were genotyped with 8K SNPs. The raw SNP set was filtered differently, producing four SNP sets that were further filtered by missing data, genotype frequency, and minor allele frequency. For each set, an identity by descent (IBD) matrix was generated to perform the relationship prediction, revealing from 22,114 to 23,859 relationships. Familial categories from the first to the third degree were able to be assigned. The feasibility of SNP genotyping for future studies on the kinship analysis and pedigree reconstruction of cork oak populations was demonstrated. The information produced may be used in further breeding and conservation programs for cork oakpt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationMendes, B.; Sampaio, T.; Antunes, M.A.; Magalhães, H.; Costa e Silva, F.; Borges, C.; Simões, F.; Usié, A.; Almeida, M.H.; Ramos, A.M. Kinship Analysis and Pedigree Reconstruction of a Natural Regenerated Cork Oak (Quercus suber) Population. Forests 2022, 13, 226pt_PT
dc.identifier.doihttps://doi.org/10.3390/f13020226pt_PT
dc.identifier.urihttp://hdl.handle.net/10400.5/23697
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherMDPIpt_PT
dc.relationForest Research Centre
dc.relationMediterranean Institute for Agriculture, Environment and Development
dc.relationPROGRAMA SUSFOR
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.subjectcork oakpt_PT
dc.subjectpedigree reconstructionpt_PT
dc.subjectSNPpt_PT
dc.subjectkinshippt_PT
dc.titleKinship Analysis and Pedigree Reconstruction of a Natural Regenerated Cork Oak (Quercus suber) Populationpt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardNumberUIDB/00239/2020
oaire.awardNumberUIDB/05183/2020
oaire.awardNumberPD/BD/52402/2013
oaire.awardTitleForest Research Centre
oaire.awardTitleMediterranean Institute for Agriculture, Environment and Development
oaire.awardTitlePROGRAMA SUSFOR
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F00239%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F05183%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT//PD%2FBD%2F52402%2F2013/PT
oaire.citation.titleForestspt_PT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
person.familyNameAlmeida
person.givenNameMaria Helena
person.identifier.orcid0000-0003-4223-3614
person.identifier.scopus-author-id7202362542
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublication178b7264-ff8a-4abd-9102-e2d25836fc36
relation.isAuthorOfPublication.latestForDiscovery178b7264-ff8a-4abd-9102-e2d25836fc36
relation.isProjectOfPublication56bd0ae9-f8da-4344-b9a2-f633d4f68b89
relation.isProjectOfPublicationea7c80fb-492f-41f5-8a20-c928555f78e6
relation.isProjectOfPublication8cc09fa8-2adb-47c9-9463-78e156ce8014
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