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DNA Sequencing as a Tool to Monitor Marine Ecological Status

2017Journal article Restricted access
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dc.contributor.authorGoodwin, Kelly D.
dc.contributor.authorThompson, Luke R.
dc.contributor.authorDuarte, Bernardo
dc.contributor.authorKahlke, Tim
dc.contributor.authorThompson, Andrew R.
dc.contributor.authorMarques, J. C.
dc.contributor.authorCaçador, Isabel
dc.date.accessioned2019-06-25T09:41:56Z
dc.date.available2019-06-25T09:41:56Z
dc.date.issued2017
dc.description.abstractMany ocean policies mandate integrated, ecosystem-based approaches to marine monitoring, driving a global need for efficient, low-cost bioindicators of marine ecological quality. Most traditional methods to assess biological quality rely on specialized expertise to provide visual identification of a limited set of specific taxonomic groups, a time-consuming process that can provide a narrow view of ecological status. In addition, microbial assemblages drive food webs but are not amenable to visual inspection and thus are largely excluded from detailed inventory. Molecular-based assessments of biodiversity and ecosystem function offer advantages over traditional methods and are increasingly being generated for a suite of taxa using a “microbes to mammals” or “barcodes to biomes” approach. Progress in these efforts coupled with continued improvements in high-throughput sequencing and bioinformatics pave the way for sequence data to be employed in formal integrated ecosystem evaluation, including food web assessments, as called for in the European Union Marine Strategy Framework Directive. DNA sequencing of bioindicators, both traditional (e.g., benthic macroinvertebrates, ichthyoplankton) and emerging (e.g., microbial assemblages, fish via eDNA), promises to improve assessment of marine biological quality by increasing the breadth, depth, and throughput of information and by reducing costs and reliance on specialized taxonomic expertise.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.doi10.3389/fmars.2017.00107pt_PT
dc.identifier.issn2296-7745
dc.identifier.urihttp://hdl.handle.net/10451/38778
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.relation.publisherversionhttps://www.frontiersin.org/articles/10.3389/fmars.2017.00107/fullpt_PT
dc.subjectmetageneticspt_PT
dc.subjectmetagenomicspt_PT
dc.subjectmetabarcodingpt_PT
dc.subjecteDNApt_PT
dc.subjectmarine biological quality element (BQE)pt_PT
dc.subjectgood ecological status (GES)pt_PT
dc.subjectbiodiversity and ecosystem function (BEF)pt_PT
dc.titleDNA Sequencing as a Tool to Monitor Marine Ecological Statuspt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.citation.startPage107pt_PT
oaire.citation.titleFrontiers in Marine Sciencept_PT
oaire.citation.volume4pt_PT
person.familyNameDuarte
person.familyNameMARQUES
person.familyNameCaçador
person.givenNameBernardo
person.givenNameJOÃO CARLOS
person.givenNameIsabel
person.identifier89449
person.identifier134821
person.identifier.ciencia-id731E-093F-D4C8
person.identifier.ciencia-id9F11-7A1E-BEEC
person.identifier.ciencia-id631C-9FFE-CA81
person.identifier.orcid0000-0003-1914-7435
person.identifier.orcid0000-0001-8865-8189
person.identifier.orcid0000-0002-4475-6091
person.identifier.ridH-2001-2011
person.identifier.ridL-9478-2014
person.identifier.ridC-2618-2012
person.identifier.scopus-author-id20734149900
person.identifier.scopus-author-id7203032961
person.identifier.scopus-author-id6602533871
rcaap.rightsrestrictedAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublicationa72f0f40-c224-49ad-ba21-ebb5f9aab09c
relation.isAuthorOfPublication97130a55-0383-4d1b-8d73-4a5ca889e529
relation.isAuthorOfPublication02ecb390-88b9-4e2f-8690-eba66c3b5311
relation.isAuthorOfPublication.latestForDiscovery02ecb390-88b9-4e2f-8690-eba66c3b5311

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