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The draft genome sequence of cork oak

2018-05Journal article Open access
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dc.contributor.authorRamos, António Marcos
dc.contributor.authorUsié, Ana
dc.contributor.authorBarbosa, Pedro
dc.contributor.authorBarros, Pedro M.
dc.contributor.authorCapote, Tiago
dc.contributor.authorChaves, Inês
dc.contributor.authorSimões, Fernanda
dc.contributor.authorAbreu, Isabl
dc.contributor.authorCarrasquinho, Isabel
dc.contributor.authorFaro, Carlos
dc.contributor.authorGuimarães, Joana B.
dc.contributor.authorMendonça, Diogo
dc.contributor.authorNóbrega, Filomena
dc.contributor.authorRodrigues, Leandra
dc.contributor.authorSaibo, Nelson J. M.
dc.contributor.authorVarela, Maria Carolina
dc.contributor.authorEgas, Conceição
dc.contributor.authorMatos, José
dc.contributor.authorMiguel, Célia M.
dc.contributor.authorOliveira, M. Margarida
dc.contributor.authorRicardo, Cândido P.
dc.contributor.authorGonçalves, Sónia
dc.date.accessioned2023-10-13T17:38:38Z
dc.date.available2023-10-13T17:38:38Z
dc.date.issued2018-05
dc.description.abstractCork oak (Quercus suber) is native to southwest Europe and northwest Africa where it plays a crucial environmental and economical role. To tackle the cork oak production and industrial challenges, advanced research is imperative but dependent on the availability of a sequenced genome. To address this, we produced the first draft version of the cork oak genome. We followed a de novo assembly strategy based on high-throughput sequence data, which generated a draft genome comprising 23,347 scaffolds and 953.3 Mb in size. A total of 79,752 genes and 83,814 transcripts were predicted, including 33,658 high-confidence genes. An InterPro signature assignment was detected for 69,218 transcripts, which represented 82.6% of the total. Validation studies demonstrated the genome assembly and annotation completeness and highlighted the usefulness of the draft genome for read mapping of high-throughput sequence data generated using different protocols. All data generated is available through the public databases where it was deposited, being therefore ready to use by the academic and industry communities working on cork oak and/or related species.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationRamos, A., Usié, A., Barbosa, P. et al. The draft genome sequence of cork oak. Sci Data 5, 180069 (2018). https://doi.org/10.1038/sdata.2018.69pt_PT
dc.identifier.doi10.1038/sdata.2018.69pt_PT
dc.identifier.urihttp://hdl.handle.net/10451/59766
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherNaturept_PT
dc.relationALENT-07-0224-FEDER-001754pt_PT
dc.relationFCT IF/01015/2013/CP1209/CT0001pt_PT
dc.relationInAlentejo ALENT-07-0224-FEDER-001754pt_PT
dc.relationFCT IF/01015/2013/CP1209/CT0001pt_PT
dc.relationFCT UID/AGR/00115/2013pt_PT
dc.relationFCT UID/Multi/04551/2013pt_PT
dc.relationFCT SFRH/BPD/86742/2012pt_PT
dc.relationFCT IF/01126/2012pt_PT
dc.relationFCT IF/00960/2013pt_PT
dc.relationFCT IF/01168/2013pt_PT
dc.relationEU project ELIXIR-EXCELERATE (H2020, ID 676559)pt_PT
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.titleThe draft genome sequence of cork oakpt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.citation.issue1pt_PT
oaire.citation.titleScientific Datapt_PT
oaire.citation.volume5pt_PT
person.familyNameMatos
person.givenNameJosé
person.identifier0000000068588745
person.identifier.ciencia-id7C19-72D4-D3DF
person.identifier.orcid0000-0001-8772-6223
person.identifier.scopus-author-id56304302400
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublication08be9319-6e65-44fa-acfb-ec10f2fc56c8
relation.isAuthorOfPublication.latestForDiscovery08be9319-6e65-44fa-acfb-ec10f2fc56c8

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