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Reference tissue normalization of prostate MRI with automatic multi-organ deep learning pelvis segmentation
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Resumo(s)
Prostate cancer is the most common cancer among male patients and second leading cause of death from cancer in men (excluding non-melanoma skin cancer). Magnetic Resonance Imaging (MRI) is currently becoming the modality of choice for clinical staging of localized prostate cancer. However, MRI lacks intensity quantification which hinders its diagnostic ability. The overall aim of this dissertation is to automate a novel normalization method that can potentially quantify general MR intensities, thus improving the diagnostic ability of MRI. Two Prostate multi-parametric MRI cohorts, of 2012 and 2016, were used in this retrospective study. To improve the diagnostic ability of T2-Weighted MRI, a novel multi-reference tissue normalization method was tested and automated. This method consists of computing the average intensity of the reference tissues and the corresponding normalized reference values to define a look-up-table through interpolation. Since the method requires delineation of multiple reference tissues, an MRI-specific Deep Learning model, Aniso-3DUNET, was trained on manual segmentations and tested to automate this segmentation step. The output of the Deep Learning model, that consisted of automatic segmentations, was validated and used in an automatic normalization approach. The effect of the manual and automatic normalization approaches on diagnostic accuracy of T2-weighted intensities was determined with Receiver Operating Characteristic (ROC) analyses. The Areas Under the Curve (AUC) were compared. The automatic segmentation of multiple reference-tissues was validated with an average DICE score higher than 0.8 in the test phase. Thereafter, the method developed demonstrated that the normalized intensities lead to an improved diagnostic accuracy over raw intensities using the manual approach, with an AUC going from 0.54 (raw) to 0.68 (normalized), and automatic approach, with an AUC going from 0.68 to 0.73. This study demonstrates that multi-reference tissue normalization improves quantification of T2-weighted images and diagnostic accuracy, possibly leading to a decrease in radiologist’s interpretation variability. It is also possible to conclude that this novel T2-weighted MRI normalization method can be automatized, becoming clinically applicable.
Descrição
Tese de mestrado integrado, Engenharia Biomédica e Biofísica (Engenharia Clínica e Instrumentação Médica) Universidade de Lisboa, Faculdade de Ciências, 2018
Palavras-chave
Ressonância magnética Normalização Deep learning Tecidos de referência Teses de mestrado - 2018