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TypOn: the microbial typing ontology

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dc.contributor.authorVaz, Cátia
dc.contributor.authorFrancisco, Alexandre P.
dc.contributor.authorSilva, Mickael
dc.contributor.authorJolley, Keith A.
dc.contributor.authorBray, James E.
dc.contributor.authorPouseele, Hannes
dc.contributor.authorRothganger, Joerg
dc.contributor.authorRamirez, Mário
dc.contributor.authorCarrico, Joao Andre
dc.date.accessioned2022-02-16T14:21:52Z
dc.date.available2022-02-16T14:21:52Z
dc.date.issued2014
dc.description© 2014 Vaz et al.; licensee BioMed Central Ltd. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.pt_PT
dc.description.abstractBacterial identification and characterization at subspecies level is commonly known as Microbial Typing. Currently, these methodologies are fundamental tools in Clinical Microbiology and bacterial population genetics studies to track outbreaks and to study the dissemination and evolution of virulence or pathogenicity factors and antimicrobial resistance. Due to advances in DNA sequencing technology, these methods have evolved to become focused on sequence-based methodologies. The need to have a common understanding of the concepts described and the ability to share results within the community at a global level are increasingly important requisites for the continued development of portable and accurate sequence-based typing methods, especially with the recent introduction of Next Generation Sequencing (NGS) technologies. In this paper, we present an ontology designed for the sequence-based microbial typing field, capable of describing any of the sequence-based typing methodologies currently in use and being developed, including novel NGS based methods. This is a fundamental step to accurately describe, analyze, curate, and manage information for microbial typing based on sequence based typing methods.pt_PT
dc.description.sponsorshipThis study was partly supported by the European Community grant FP7-278864-2 (PathoNgenTrace, http://www.patho-ngen-trace.eu/), and by national funds through FCT – Fundação para a Ciência e Tecnologia, under projects PTDC/EIA-CCO/118533/2010, EXCL/EEI-ESS/0257/2012, and PEst-OE/EEI/LA0021/2013.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationJ Biomed Semantics . 2014 Oct 18;5(1):43pt_PT
dc.identifier.doi10.1186/2041-1480-5-43pt_PT
dc.identifier.eissn2041-1480
dc.identifier.urihttp://hdl.handle.net/10451/51347
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherBioMed Central, Ltd.pt_PT
dc.relationFP7-278864-2pt_PT
dc.relation.publisherversionhttps://jbiomedsem.biomedcentral.com/pt_PT
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.subjectKnowledge representationpt_PT
dc.subjectMicrobial typing methodspt_PT
dc.subjectOntologypt_PT
dc.titleTypOn: the microbial typing ontologypt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardNumberPTDC/EIA-CCO/118533/2010
oaire.awardNumberEXCL/EEI-ESS/0257/2012
oaire.awardNumberPEst-OE/EEI/LA0021/2013
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FEIA-CCO%2F118533%2F2010/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/EXCL%2FEEI-ESS%2F0257%2F2012/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PEst-OE%2FEEI%2FLA0021%2F2013/PT
oaire.citation.issue1pt_PT
oaire.citation.titleJournal of Biomedical Semanticspt_PT
oaire.citation.volume5pt_PT
oaire.fundingStream3599-PPCDT
oaire.fundingStream3599-PPCDT
oaire.fundingStream3599-PPCDT
person.familyNameRamos de Almeida Ramirez
person.familyNameCarrico
person.givenNameMário Nuno
person.givenNameJoao
person.identifierB-4993-2008
person.identifier391563
person.identifier.ciencia-id9C1C-F2A2-4226
person.identifier.orcid0000-0002-4084-6233
person.identifier.orcid0000-0002-5274-2722
person.identifier.ridA-7367-2008
person.identifier.scopus-author-id7201568476
person.identifier.scopus-author-id8266333200
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
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relation.isAuthorOfPublicatione4e2a0de-797a-4935-8b91-134efe7b784e
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