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- Evolution of Flavylium-Based Color Systems in Plants: What Physical Chemistry Can Tell UsPublication . Pina, Fernando; Alejo-Armijo, Alfonso; Clemente, Adelaide; Mendoza, Johan; Seco, André; Basílio, Nuno; Parola, António JorgeAnthocyanins are the basis of the color of angiosperms, 3-deoxyanthocyanins and sphagnorubin play the same role in mosses and ferns, and auronidins are responsible for the color in liverworts. In this study, the color system of cyanidin-3-O-glucoside (kuromanin) as a representative compound of simpler anthocyanins was fully characterized by stopped flow. This type of anthocyanin cannot confer significant color to plants without intra- or intermolecular interactions, complexation with metals or supramolecular structures as in Commelina communis. The anthocyanin's color system was compared with those of 3-deoxyanthocyanins and riccionidin A, the aglycone of auronidins. The three systems follow the same sequence of chemical reactions, but the respective thermodynamics and kinetics are dramatically different.